!CORRESPONDENCE OF PDB TYPES WITH CHARGES & NUMERICAL TYPE INDICATORS ! ! --AMBER united-atom charges, based on Weiner et al., ! JACS 106, 765 (1984) ! --names as per AMBER convention ! ! --termini not from the reference above; 0.416=(0.248 + 1.0)/3 ! --0.248 is the amide H charge in the residues above ! --simplistic way of making the N-terminus have a net charge of +1 ! and the C-terminus have a net charge of -1 ! !aaaxxxrrrnnnncqqqqqqqqxtt format (A4, 3x, A3, A4, A1, F8.3, 1x, I2) ! N ALA -0.494 8 H ALA 0.302 6 CA ALA 0.045 5 HA ALA 0.023 7 CB ALA -0.091 5 1HB ALA 0.043 7 2HB ALA 0.043 7 3HB ALA 0.043 7 C ALA 0.673 1 O ALA -0.585 11 N ALB -0.520 8 CA ALB 0.215 5 C ALB 0.526 1 O ALB -0.900 11 HN ALB 0.648 6 CB ALB 0.031 5 N ARG -0.494 8 H ARG 0.302 6 CA ARG 0.030 5 HA ARG 0.048 7 CB ARG 0.004 5 2HB ARG 0.026 7 3HB ARG 0.026 7 CG ARG -0.003 5 2HG ARG 0.031 7 3HG ARG 0.031 7 CD ARG 0.101 5 2HD ARG 0.058 7 3HD ARG 0.058 7 NE ARG -0.511 8 HE ARG 0.323 6 CZ ARG 0.871 1 NH1 ARG -0.835 8 1HH1 ARG 0.420 6 2HH1 ARG 0.420 6 NH2 ARG -0.835 8 1HH2 ARG 0.420 6 2HH2 ARG 0.420 6 C ARG 0.673 1 O ARG -0.585 11 N ARH -0.520 8 C ARH 0.526 1 O ARH -0.900 11 CA ARH 0.237 5 CB ARH 0.049 5 CG ARH 0.058 5 CD ARH 0.111 5 NE ARH -0.493 8 CZ ARH 0.813 1 NH1 ARH -0.635 8 NH2 ARH -0.634 8 HN ARH 0.648 6 HNE ARH 0.294 6 HN11 ARH 0.361 6 HN12 ARH 0.362 6 HN21 ARH 0.361 6 HN22 ARH 0.362 6 N ASN -0.494 8 H ASN 0.302 6 CA ASN 0.055 5 HA ASN 0.041 7 CB ASN -0.194 5 1HB ASN 0.083 7 2HB ASN 0.083 7 CG ASN 0.666 1 OD1 ASN -0.575 11 ND2 ASN -0.775 8 1HD2 ASN 0.360 6 2HD2 ASN 0.360 6 C ASN 0.673 1 O ASN -0.585 11 N ASO -0.520 8 CA ASO 0.217 5 C ASO 0.526 1 O ASO -0.900 11 CB ASO 0.003 5 ND2 ASO -0.867 8 AD2 ASO -0.867 8 CG ASO 0.575 1 OD1 ASO -0.870 11 AD1 ASO -0.870 11 HN ASO 0.648 6 HND1 ASO 0.544 6 HND2 ASO 0.544 6 N ASP -0.494 8 H ASP 0.302 6 CA ASP -0.167 5 HA ASP 0.066 7 CB ASP 0.002 5 2HB ASP -0.021 7 3HB ASP -0.021 7 CG ASP 0.767 1 OD1 ASP -0.761 11 OD2 ASP -0.761 11 C ASP 0.673 1 O ASP -0.585 11 OD1 ASQ -0.706 11 OD2 ASQ -0.706 11 CA ASQ 0.246 5 CB ASQ -0.208 5 CG ASQ 0.620 1 N ASQ -0.520 8 C ASQ 0.526 1 O ASQ -0.900 11 HN ASQ 0.648 6 N ASH -0.494 8 H ASH 0.302 6 CA ASH 0.112 5 HA ASH 0.011 7 CB ASH -0.042 5 2HB ASH 0.045 7 3HB ASH 0.045 7 CG ASH 0.607 1 OD1 ASH -0.544 12 OD2 ASH -0.570 11 HD2 ASH 0.440 6 C ASH 0.673 1 O ASH -0.585 11 N CYS -0.494 8 H CYS 0.302 6 CA CYS 0.081 4 HA CYS 0.027 7 CB CYS -0.005 5 2HB CYS 0.045 7 3HB CYS 0.045 7 SG CYS -0.243 14 HG CYS 0.155 6 C CYS 0.673 1 O CYS -0.585 11 N CYT -0.520 8 C CYT 0.526 1 O CYT -0.900 11 CA CYT 0.146 5 CB CYT 0.100 5 SG CYT -0.535 14 HN CYT 0.648 6 HSG CYT 0.535 6 N CYX -0.494 8 H CYX 0.302 6 CA CYX 0.060 4 HA CYX 0.036 7 CB CYX 0.003 5 2HB CYX 0.047 7 3HB CYX 0.047 7 SG CYX -0.089 14 C CYX 0.673 1 O CYX -0.585 11 N CYY -0.520 8 C CYY 0.526 1 O CYY -0.900 11 CA CYY 0.088 4 CB CYY 0.143 3 SG CYY 0.015 14 HN CYY 0.648 6 N GLN -0.494 8 H GLN 0.302 6 CA GLN -0.030 4 HA GLN 0.038 7 CB GLN 0.141 5 2HB GLN -0.002 7 3HB GLN -0.002 7 CG GLN -0.282 5 2HG GLN 0.114 7 3HG GLN 0.114 7 CD GLN 0.705 1 OE1 GLN -0.616 11 NE2 GLN -0.779 8 1HE2 GLN 0.352 6 2HE2 GLN 0.352 6 C GLN 0.673 1 O GLN -0.585 11 N GLO -0.520 8 CA GLO 0.210 4 C GLO 0.526 1 O GLO -0.900 11 CB GLO 0.053 3 CG GLO -0.043 3 NE2 GLO -0.867 8 AE2 GLO -0.867 8 CD GLO 0.675 1 OE1 GLO -0.870 11 AE1 GLO -0.870 11 HN GLO 0.648 6 HNE1 GLO 0.544 6 HNE2 GLO 0.544 6 N GLU -0.494 8 H GLU 0.302 6 CA GLU -0.238 5 HA GLU 0.094 7 CB GLU 0.305 5 2HB GLU -0.070 7 3HB GLU -0.070 7 CG GLU -0.167 5 2HG GLU 0.031 7 3HG GLU 0.031 7 CD GLU 0.661 1 OE1 GLU -0.736 11 OE2 GLU -0.736 11 C GLU 0.673 1 O GLU -0.585 11 OE1 GLV -0.706 11 OE2 GLV -0.706 11 CD GLV 0.620 1 N GLV -0.520 8 C GLV 0.526 1 O GLV -0.900 11 CA GLV 0.246 4 CB GLV 0.000 3 CG GLV -0.208 3 HN GLV 0.648 6 N GLY -0.494 8 H GLY 0.302 6 CA GLY -0.033 5 2HA GLY 0.069 7 3HA GLY 0.069 7 C GLY 0.673 1 O GLY -0.585 11 N GLZ -0.520 8 CA GLZ 0.246 4 C GLZ 0.526 1 O GLZ -0.900 11 HN GLZ 0.648 6 N HID -0.494 8 H HID 0.302 6 CA HID 0.086 5 HA HID 0.007 7 CB HID -0.060 5 2HB HID 0.037 7 3HB HID 0.037 7 CG HID 0.059 1 ND1 HID -0.165 8 1HD HID 0.272 6 CE1 HID 0.099 1 1HE HID 0.102 7 NE2 HID -0.471 8 CD2 HID 0.010 1 2HD HID 0.093 7 C HID 0.673 1 O HID -0.585 11 N HIC -0.520 8 C HIC 0.526 1 O HIC -0.900 11 CA HIC 0.219 4 CB HIC 0.060 3 CG HIC 0.089 1 CD2 HIC 0.145 1 AD2 HIC 0.145 1 CE1 HIC 0.384 1 AE1 HIC 0.384 1 ND1 HIC -0.444 8 AD1 HIC -0.444 8 NE2 HIC -0.527 8 AE2 HIC -0.527 8 HN HIC 0.648 6 HND HIC 0.320 6 N HIE -0.494 8 H HIE 0.302 6 CA HIE 0.038 4 HA HIE 0.022 7 CB HIE -0.041 3 2HB HIE 0.048 7 3HB HIE 0.048 7 CG HIE 0.250 1 ND1 HIE -0.567 8 CE1 HIE 0.231 1 1HE HIE 0.068 6 NE2 HIE -0.211 8 2HE HIE 0.290 6 CD2 HIE -0.228 1 2HD HIE 0.157 6 C HIE 0.673 1 O HIE -0.585 11 N HIE -0.520 8 C HIE 0.526 1 O HIE -0.500 11 CA HIE 0.219 4 CB HIE 0.060 3 CG HIE 0.112 1 CD2 HIE 0.122 1 AD2 HIE 0.122 1 CE1 HIE 0.384 1 AE1 HIE 0.384 1 ND1 HIE -0.527 8 AD1 HIE -0.527 8 NE2 HIE -0.444 8 AE2 HIE -0.444 8 HN HIE 0.248 6 HNE HIE 0.320 6 N HIF -0.520 8 C HIF 0.526 1 O HIF -0.900 11 CA HIF 0.219 4 CB HIF 0.060 3 CG HIF 0.112 1 CD2 HIF 0.122 1 AD2 HIF 0.122 1 CE1 HIF 0.384 1 AE1 HIF 0.384 1 ND1 HIF -0.527 8 AD1 HIF -0.527 8 NE2 HIF -0.444 8 AE2 HIF -0.444 8 HN HIF 0.648 6 HNE HIF 0.320 6 N HIP -0.494 8 H HIP 0.302 6 CA HIP 0.229 5 HA HIP -0.022 7 CB HIP -0.036 5 2HB HIP 0.049 7 3HB HIP 0.049 7 CG HIP 0.088 1 ND1 HIP -0.019 8 1HD HIP 0.296 6 CE1 HIP -0.073 1 1HE HIP 0.212 6 NE2 HIP -0.029 8 2HE HIP 0.315 6 CD2 HIP -0.145 1 2HD HIP 0.190 6 C HIP 0.673 1 O HIP -0.585 11 N HIQ -0.520 8 C HIQ 0.526 1 O HIQ -0.900 11 CA HIQ 0.195 4 CB HIQ 0.211 3 CG HIQ 0.103 1 CD2 HIQ 0.353 1 AD2 HIQ 0.353 1 CE1 HIQ 0.719 1 AE1 HIQ 0.719 1 ND1 HIQ -0.613 8 AD1 HIQ -0.613 8 NE2 HIQ -0.686 8 AE2 HIQ -0.686 8 HN HIQ 0.648 6 HND HIQ 0.478 6 HNE HIQ 0.486 6 N HIS -0.520 8 C HIS 0.526 1 O HIS -0.500 11 CA HIS 0.195 4 CB HIS 0.211 3 CG HIS 0.103 1 CD2 HIS 0.353 1 AD2 HIS 0.353 1 CE1 HIS 0.719 1 AE1 HIS 0.719 1 ND1 HIS -0.613 8 AD1 HIS -0.613 8 NE2 HIS -0.686 8 AE2 HIS -0.686 8 HN HIS 0.248 6 HND HIS 0.478 6 HNE HIS 0.486 6 N HIT -0.520 8 C HIT 0.526 1 O HIT -0.900 11 CA HIT 0.195 4 CB HIT 0.211 3 CG HIT 0.103 1 CD2 HIT 0.353 1 AD2 HIT 0.353 1 CE1 HIT 0.719 1 AE1 HIT 0.719 1 ND1 HIT -0.613 8 AD1 HIT -0.613 8 NE2 HIT -0.686 8 AE2 HIT -0.686 8 HN HIT 0.648 6 HND HIT 0.478 6 HNE HIT 0.486 6 N ILE -0.494 8 H ILE 0.302 6 CA ILE -0.026 5 HA ILE 0.064 7 CB ILE 0.059 4 HB ILE 0.026 7 CG2 ILE -0.303 2 1HG2 ILE 0.082 7 2HG2 ILE 0.082 7 3HG2 ILE 0.082 7 CG1 ILE -0.021 5 2HG1 ILE 0.028 7 3HG1 ILE 0.028 7 CD1 ILE -0.094 5 1HD1 ILE 0.032 7 1HD2 ILE 0.032 7 1HD3 ILE 0.032 7 C ILE 0.673 1 O ILE -0.585 11 C ILF 0.526 1 O ILF -0.900 11 CA ILF 0.199 4 CB ILF 0.030 4 CG1 ILF 0.017 3 CG2 ILF 0.001 2 CD1 ILF -0.001 2 HN ILF 0.648 6 N LEU -0.494 8 H LEU 0.302 6 CA LEU -0.010 5 HA LEU 0.043 7 CB LEU -0.132 5 HB2 LEU 0.032 7 HB3 LEU 0.032 7 CG LEU 0.443 5 HG LEU -0.066 7 CD1 LEU -0.431 5 1HD1 LEU 0.104 7 2HD1 LEU 0.104 7 3HD1 LEU 0.104 7 CD2 LEU -0.431 5 1HD2 LEU 0.104 7 2HD2 LEU 0.104 7 3HD2 LEU 0.104 7 C LEU 0.673 1 O LEU -0.585 11 N LEV -0.520 8 C LEV 0.526 1 O LEV -0.900 11 CA LEV 0.204 4 CB LEV 0.016 3 CG LEV 0.054 4 CD1 LEV -0.014 2 CD2 LEV -0.014 2 HN LEV 0.648 6 N LYS -0.494 8 H LYS 0.302 6 CA LYS 0.034 5 HA LYS 0.046 7 CB LYS -0.020 5 HB2 LYS 0.014 7 HB3 LYS 0.014 7 CG LYS -0.023 5 HG2 LYS 0.043 7 HG3 LYS 0.043 7 CD LYS -0.057 5 HD2 LYS 0.060 7 HD3 LYS 0.060 7 CE LYS 0.146 5 HE2 LYS 0.047 7 HE3 LYS 0.047 7 NZ LYS -0.213 9 HZ1 LYS 0.287 6 HZ2 LYS 0.287 6 HZ3 LYS 0.287 6 C LYS 0.637 1 O LYS -0.585 11 N LYT -0.520 8 C LYT 0.526 1 O LYT -0.900 11 CA LYT 0.227 4 CB LYT 0.039 3 CG LYT 0.053 3 CD LYT 0.048 3 CE LYT 0.218 3 NZ LYT -0.272 9 HN LYT 0.648 6 HNZ1 LYT 0.311 6 HNZ2 LYT 0.311 6 HNZ3 LYT 0.311 6 N MET -0.494 8 H MET 0.302 6 CA MET 0.011 5 HA MET 0.032 7 CB MET 0.094 5 HB2 MET -0.019 7 HB3 MET -0.019 7 CG MET -0.013 5 HG2 MET 0.070 7 HG3 MET 0.070 7 SD MET -0.239 14 CE MET -0.055 5 HE1 MET 0.058 7 HE2 MET 0.058 7 HE3 MET 0.058 7 C MET 0.673 1 O MET -0.585 11 N MEU -0.520 8 C MEU 0.526 1 O MEU -0.900 11 CA MEU 0.137 4 CB MEU 0.037 3 CG MEU 0.090 3 SD MEU -0.025 14 CE MEU 0.007 2 HN MEU 0.648 6 N PHE -0.494 8 H PHE 0.302 6 CA PHE 0.042 5 HA PHE 0.018 7 CB PHE -0.002 5 HB2 PHE 0.024 7 HB3 PHE 0.024 7 CG PHE 0.029 1 CD1 PHE -0.105 1 HD1 PHE 0.112 6 CE1 PHE -0.151 1 HE1 PHE 0.116 6 CZ PHE -0.077 1 HZ PHE 0.100 6 CE2 PHE -0.151 1 HE2 PHE 0.116 6 CD2 PHE -0.105 1 HD2 PHE 0.112 6 C PHE 0.673 1 O PHE -0.585 11 N PHF -0.520 8 C PHF 0.526 1 O PHF -0.900 11 CA PHF 0.214 4 CB PHF 0.038 3 CG PHF 0.011 1 CD1 PHF -0.011 1 CD2 PHF -0.011 1 CE1 PHF 0.004 1 CE2 PHF 0.004 1 CZ PHF -0.003 1 HN PHF 0.648 6 N PRO -0.275 8 CD PRO 0.063 5 HD2 PRO 0.027 7 HD3 PRO 0.027 7 CG PRO 0.063 5 HG2 PRO 0.006 7 HG3 PRO 0.006 7 CB PRO 0.026 5 HB2 PRO 0.021 7 HB3 PRO 0.021 7 CA PRO -0.150 5 HA PRO 0.076 7 C PRO 0.673 1 O PRO -0.585 11 N PRP -0.257 8 CA PRP 0.112 4 C PRP 0.526 1 O PRP -0.500 11 CB PRP -0.001 3 CG PRP 0.036 3 CD PRP 0.084 3 N SER -0.494 8 H SER 0.302 6 CA SER 0.072 5 HA SER 0.016 7 CB SER 0.135 5 HB2 SER 0.036 7 HB3 SER 0.036 7 OG SER -0.559 12 HG SER 0.369 6 C SER 0.673 1 O SER -0.585 11 N SES -0.520 8 C SES 0.526 1 O SES -0.900 11 CA SES 0.292 4 CB SES 0.194 3 OG SES -0.950 12 HN SES 0.648 6 HOG SES 0.710 6 N THR -0.494 8 H THR 0.302 6 CA THR 0.070 5 HA THR 0.016 7 CB THR 0.404 5 HB THR -0.091 7 CG2 THR -0.212 5 1HG2 THR 0.050 7 2HG2 THR 0.050 7 3HG2 THR 0.050 7 OG1 THR -0.637 12 HG1 THR 0.405 6 C THR 0.673 1 O THR -0.585 11 N THS -0.520 8 C THS 0.526 1 O THS -0.900 11 OG1 THS -0.950 12 CA THS 0.268 4 CB THS 0.211 4 CG2 THS 0.007 2 HN THS 0.648 6 HOG THS 0.710 6 N TRP -0.494 8 H TRP 0.302 6 CA TRP 0.023 5 HA TRP 0.038 7 CB TRP -0.017 5 HB2 TRP 0.031 7 HB3 TRP 0.031 7 CG TRP -0.099 1 CD1 TRP -0.081 1 HD1 TRP 0.143 6 NE1 TRP -0.354 8 HE1 TRP 0.340 6 CE2 TRP 0.166 1 CZ2 TRP -0.228 1 HZ2 TRP 0.138 6 CH2 TRP -0.111 1 HH2 TRP 0.108 6 CZ3 TRP -0.149 1 HZ3 TRP 0.109 6 CE3 TRP -0.216 1 HE3 TRP 0.156 6 CD2 TRP 0.077 1 C TRP 0.673 1 O TRP -0.585 11 N TRQ -0.520 8 C TRQ 0.526 1 O TRQ -0.900 11 CA TRQ 0.248 4 CB TRQ 0.020 3 CG TRQ 0.046 1 CD1 TRQ 0.117 1 CD2 TRQ -0.275 1 NE1 TRQ -0.730 8 CE2 TRQ 0.000 1 CE3 TRQ 0.145 1 CZ2 TRQ 0.029 1 CZ3 TRQ -0.082 1 CH2 TRQ 0.034 1 HN TRQ 0.648 6 HNE TRQ 0.694 6 N TYR -0.494 8 H TYR 0.302 6 CA TYR -0.001 5 HA TYR 0.056 7 CB TYR 0.021 5 HB2 TYR 0.022 7 HB3 TYR 0.022 7 CG TYR -0.002 1 CD1 TYR -0.146 1 HD1 TYR 0.119 6 CE1 TYR -0.185 1 HE1 TYR 0.137 6 CZ TYR 0.216 1 OH TYR -0.476 12 HH TYR 0.358 6 CE2 TYR -0.185 1 HE2 TYR 0.137 6 CD2 TYR -0.146 1 HD2 TYR 0.119 6 C TYR 0.673 1 O TYR -0.585 11 N TYS -0.520 8 C TYS 0.526 1 O TYS -0.900 11 OH TYS -0.768 12 CA TYS 0.245 4 CB TYS 0.022 3 CG TYS -0.001 1 CD1 TYS -0.035 1 CD2 TYS -0.035 1 CE1 TYS 0.100 1 CE2 TYS 0.100 1 CZ TYS -0.121 1 HN TYS 0.648 6 HOH TYS 0.739 6 N VAL -0.494 8 H VAL 0.302 6 CA VAL -0.053 5 HA VAL 0.039 7 CB VAL 0.367 5 HB VAL -0.015 7 CG1 VAL -0.358 5 1HG1 VAL 0.080 7 2HG1 VAL 0.080 7 3HG1 VAL 0.080 7 CG2 VAL -0.358 5 1HG2 VAL 0.080 7 2HG2 VAL 0.080 7 3HG2 VAL 0.080 7 C VAL 0.673 1 O VAL -0.585 11 N VAM -0.520 8 C VAM 0.526 1 O VAM -0.900 11 CA VAM 0.201 4 CB VAM 0.033 4 CG1 VAM 0.006 2 CG2 VAM 0.006 2 HN VAM 0.648 6 O ACE -0.500 11 C ACE 0.526 1 CH3 ACE -0.026 2 N NME -0.520 8 HN NME 0.248 6 CM NME 0.272 2 HN1 0.416 6 N-TERMINAL H HN2 0.416 6 N-TERMINAL H HN3 0.416 6 N-TERMINAL H HN1 PRO 0.500 6 HN2 PRO 0.500 6 HN3 PRO 0.500 6 OT -1.00 11 C-TERMINAL OXT OXT -1.00 11 C-TERMINAL OXT OT1 -0.75 11 C-TERMINAL OXYGENS, OT2 -0.75 11 CHARGE-EQUALIZED OH2 TIP -0.834 12 H1 TIP 0.417 6 H2 TIP 0.417 6 OW WAT -0.834 12 HW1 WAT 0.417 6 HW2 WAT 0.417 6 OH2 SPC -0.820 12 H1 SPC 0.410 6 H2 SPC 0.410 6 NA 1.00 19 CU 2.00 20 ZN 2.00 26 FE 2.00 20 MG 2.00 20 MN 2.00 20 LI 1.00 20 AL 3.00 20 CA 2.00 21 CL -1.00 22 LJ 0.00 23 LENNARD-JONES WATER PARTICLE LP 0.00 6 LONE PAIR C CBX 0.000 1 O1 CBX 0.000 11 O2 CBX 0.000 11 C1 GAR 0.194 4 O6 GAR -0.240 12 C2 GAR 0.194 4 O8 GAR -0.240 12 C3 GAR 0.292 4 O4 GAR -0.510 12 C5 GAR 0.211 4 C10 GAR 0.211 3 O12 GAR -0.510 12 N19 GAR -0.272 8 C21 GAR 0.526 1 O22 GAR -0.500 11 C23 GAR 0.246 3 N24 GAR 1.000 9 P15 GAR 1.390 13 O16 GAR -0.847 12 O17 GAR -0.847 12 O18 GAR -0.847 12 P1 NAP 1.390 13 O2 NAP -0.500 12 O3 NAP -0.500 11 O4 NAP -0.500 12 C5 NAP 0.353 3 C6 NAP 0.353 4 O7 NAP -0.500 12 C8 NAP 0.353 4 O9 NAP -0.500 12 C10 NAP 0.353 4 O11 NAP -0.500 12 C12 NAP 0.353 4 N13 NAP -0.520 10 C14 NAP 0.353 1 N15 NAP -0.520 8 C16 NAP 0.353 1 C17 NAP 0.353 1 N18 NAP -0.520 10 N19 NAP -0.520 8 C20 NAP 0.353 1 N21 NAP -0.520 8 C22 NAP 0.353 1 O23 NAP -0.500 12 P24 NAP 1.390 13 O25 NAP -0.500 12 O26 NAP -0.500 11 O27 NAP -0.500 12 C28 NAP 0.353 3 C29 NAP 0.353 4 O30 NAP -0.500 12 C31 NAP 0.353 4 O32 NAP -0.500 12 C33 NAP 0.353 4 O34 NAP -0.500 12 C35 NAP 0.353 4 N36 NAP 0.213 8 C37 NAP 0.240 1 C38 NAP -0.133 1 C39 NAP 0.333 1 O40 NAP -0.299 11 N41 NAP 0.085 8 C42 NAP 0.258 1 C43 NAP 0.068 1 C44 NAP 0.371 1 P45 NAP 1.390 13 O46 NAP -0.500 12 O47 NAP -0.500 12 O48 NAP -0.500 11 OP3 NAP -0.500 12 OP2 NAP -0.500 12 OP1 NAP -0.500 12 NP NAP 1.390 13 NO5 NAP -0.500 12 NC5 NAP 0.353 4 NC4 NAP 0.353 4 NC3 NAP 0.353 4 NO3 NAP -0.500 12 NO4 NAP -0.500 12 NO2 NAP -0.500 12 NO1 NAP -0.500 12 P1 NAH 1.390 13 O2 NAH -0.500 12 O3 NAH -0.500 11 O4 NAH -0.500 12 C5 NAH 0.353 3 C6 NAH 0.353 4 O7 NAH -0.500 12 C8 NAH 0.353 4 O9 NAH -0.500 12 C10 NAH 0.353 4 O11 NAH -0.500 12 C12 NAH 0.353 4 N13 NAH -0.520 10 C14 NAH 0.353 1 N15 NAH -0.520 8 C16 NAH 0.353 1 C17 NAH 0.353 1 N18 NAH -0.520 10 N19 NAH -0.520 8 C20 NAH 0.353 1 N21 NAH -0.520 8 C22 NAH 0.353 1 O23 NAH -0.500 12 P24 NAH 1.390 13 O25 NAH -0.500 12 O26 NAH -0.500 11 O27 NAH -0.500 12 C28 NAH 0.353 3 C29 NAH 0.353 4 O30 NAH -0.500 12 C31 NAH 0.353 4 O32 NAH -0.500 12 C33 NAH 0.353 4 O34 NAH -0.500 12 C35 NAH 0.353 4 N36 NAH 0.213 8 C37 NAH 0.240 1 C38 NAH -0.133 1 C39 NAH 0.333 1 O40 NAH -0.299 11 N41 NAH 0.085 8 C42 NAH 0.258 1 C43 NAH 0.068 1 C44 NAH 0.371 1 P45 NAH 1.390 13 O46 NAH -0.500 12 O47 NAH -0.500 12 O48 NAH -0.500 11 C1 PVL -0.052 1 C2 PVL 0.526 1 C3 PVL 0.526 1 O3 PVL -0.500 11 O2 PVL -0.500 11 HOP NDP 0.000 6 P1 NDP 1.390 13 P NDP 1.390 13 P2 NDP 1.390 13 O2 NDP -0.500 12 O1 NDP -0.500 12 O3 NDP -0.500 11 O4 NDP -0.500 12 C5 NDP 0.353 3 C6 NDP 0.353 4 O7 NDP -0.500 12 C8 NDP 0.353 4 O9 NDP -0.500 12 C10 NDP 0.353 4 O11 NDP -0.500 12 C12 NDP 0.353 4 N13 NDP -0.520 10 C14 NDP 0.353 1 N15 NDP -0.520 8 C16 NDP 0.353 1 C17 NDP 0.353 1 N18 NDP -0.520 10 N19 NDP -0.520 8 C20 NDP 0.353 1 N21 NDP -0.520 8 C22 NDP 0.353 1 O23 NDP -0.500 12 P24 NDP 1.390 13 O25 NDP -0.500 12 O26 NDP -0.500 11 O27 NDP -0.500 12 C28 NDP 0.353 3 C29 NDP 0.353 4 O30 NDP -0.500 12 C31 NDP 0.353 4 O32 NDP -0.500 12 C33 NDP 0.353 4 O34 NDP -0.500 12 C35 NDP 0.353 4 N36 NDP -0.520 8 C37 NDP 0.353 1 C38 NDP 0.353 1 C39 NDP 0.353 1 O40 NDP -0.500 11 N41 NDP -0.520 10 C42 NDP 0.353 1 C43 NDP 0.353 1 C44 NDP 0.353 1 P45 NDP 1.390 13 O46 NDP -0.847 12 O47 NDP -0.847 12 O48 NDP -0.847 11 P1 NDP 1.390 13 OP3 NDP -0.500 12 P1 NDP 1.390 13 OP2 NDP -0.500 11 OP1 NDP -0.500 11 O2' NDP -0.500 12 C2' NDP 0.353 3 C1' NDP 0.353 4 N9 NDP -0.520 10 C4 NDP 0.353 4 N3 NDP -0.520 10 C2 NDP 0.353 4 N1 NDP -0.520 10 C6 NDP 0.353 4 N6 NDP -0.520 10 C5 NDP 0.353 4 N7 NDP -0.520 10 C8 NDP 0.353 4 O4' NDP -0.500 12 C4' NDP 0.353 4 C3' NDP 0.353 4 O3' NDP -0.500 12 C5' NDP 0.353 1 O5' NDP -0.500 12 OP4 NDP -0.500 12 OP1 NDP -0.500 11 OP2 NDP -0.500 11 OP5 NDP -0.500 12 P1 NAD 1.390 13 O2 NAD -0.500 12 O3 NAD -0.500 11 O4 NAD -0.500 12 C5 NAD 0.353 3 C6 NAD 0.353 4 O7 NAD -0.500 12 C8 NAD 0.353 4 O9 NAD -0.500 12 C10 NAD 0.353 4 O11 NAD -0.500 12 C12 NAD 0.353 4 N13 NAD -0.520 10 C14 NAD 0.353 1 N15 NAD -0.520 8 C16 NAD 0.353 1 C17 NAD 0.353 1 N18 NAD -0.520 10 N19 NAD -0.520 8 C20 NAD 0.353 1 N21 NAD -0.520 8 C22 NAD 0.353 1 O23 NAD -0.500 12 P24 NAD 1.390 13 O25 NAD -0.500 12 O26 NAD -0.500 11 O27 NAD -0.500 12 C28 NAD 0.353 3 C29 NAD 0.353 4 O30 NAD -0.500 12 C31 NAD 0.353 4 O32 NAD -0.500 12 C33 NAD 0.353 4 O34 NAD -0.500 12 C35 NAD 0.353 4 N36 NAD 0.213 8 C37 NAD 0.240 1 C38 NAD -0.133 1 C39 NAD 0.333 1 O40 NAD -0.299 11 N41 NAD 0.085 8 C42 NAD 0.258 1 C43 NAD 0.068 1 C44 NAD 0.371 1 P45 NAD 1.390 13 O46 NAD -0.500 12 O47 NAD -0.500 12 O48 NAD -0.500 11 N1 UMP -0.235 8 C2 UMP 0.315 3 N3 UMP -0.077 8 C4 UMP 0.245 3 C5 UMP 0.083 3 C6 UMP 0.087 3 O2 UMP -0.252 11 O4 UMP -0.270 11 C1' UMP 0.216 2 C2' UMP 0.085 2 C3' UMP 0.149 2 C4' UMP 0.175 2 O3' UMP -0.179 12 O4' UMP -0.350 12 C5' UMP 0.199 2 O5' UMP -0.352 12 P UMP 0.061 13 O1P UMP -0.633 12 O2P UMP -0.633 12 O3P UMP -0.633 12